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Compute heritability from standardized or non-standardized effects

Source: R/compute_h2.R
compute_h2.Rd

Compute heritability from standardized or non-standardized effects

Usage

compute_h2(
  b_joint,
  geno_scale = c("allele", "sd"),
  pheno_sd = 1,
  R_LD = NULL,
  af = NULL,
  full_mat = FALSE
)

Arguments

b_joint

matrix of standardized or non-standardized effects. Provide only one of these options.

geno_scale

One of allele or sd, depending on scale of b_joint

R_LD

LD pattern (optional). See ?sim_mv for more details.

af

Allele frequencies (optional, allowed only if R_LD is missing). See ?sim_mv for more details.

full_mat

If TRUE, return the full genetic variance-covariance matrix