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Retrieve LD proxies

Source: R/sim_ld_prune.R
sim_ld_proxy.Rd

Retrieve LD proxies

Usage

sim_ld_proxy(dat, index, R_LD, r2_thresh = 0.64, return_mat = FALSE)

Arguments

dat

Simulation object produced by `sim_mv`

index

list of indexes to retrieve proxies for

R_LD

LD pattern used to generate dat

r2_thresh

Get proxies with r^2 >= r2_thresh with one of the index variants

return_mat

If TRUE, return the correlation matrix between the index variant and the proxies. In this matrix, the the index variant always corresponds the first row/column and the proxies are in the order returned.