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GFA
- GFA
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R_ldsc()
- Calculate matrix of error correlations using LD-score regression.
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R_ldsc_quick()
- Cheater ld-score matrix. Fast but higher variance.
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R_pt()
- Calculate matrix of error correlations using p-value threshold method.
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condition()
- Project matrix to nearest well conditioned positive definite matrix.
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gfa_fit()
- Genetic Factor Analysis
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gwas_format()
- Convert GWAS summary statistics to a standard format
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ldsc_rg()
- Cross-Trait LD score regression
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plot_factors()
- Plot Factors from a matrix
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plot_factors_bars()
- Plot factors as barplots from a matrix
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snp_ldsc()
- LD score regression