Last updated: 2020-11-13

Checks: 2 0

Knit directory: cause/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 5f67e0a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 5f67e0a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/example_data/
    Ignored:    pipeline_code/plink_reference/
    Ignored:    sim_results/
    Ignored:    src/RcppExports.o
    Ignored:    src/cause.so
    Ignored:    src/log_likelihood_functions.o

Untracked files:
    Untracked:  analysis/mrcieu.Rmd
    Untracked:  cause.Rcheck/
    Untracked:  gwas_data/
    Untracked:  ll_v7_notes.Rmd
    Untracked:  ll_v7_notes.html
    Untracked:  pipeline_code/.snakemake/
    Untracked:  pipeline_code/config.schema.yaml
    Untracked:  pipeline_code/ld/
    Untracked:  pipeline_code/raw_data/
    Untracked:  tests/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/gwas_pairs_2.Rmd) and HTML (docs/gwas_pairs_2.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd c7a1cb4 Jean Morrison 2020-11-13 refactor website
html 89ae48a Jean Morrison 2020-05-29 Build site.
Rmd b1f8424 Jean Morrison 2020-05-29 wflow_publish(“analysis/gwas_pairs_2.Rmd”)
html 6c76002 Jean Morrison 2019-12-04 Build site.
Rmd 17dbaf7 Jean Morrison 2019-12-04 wflow_publish(files = c("analysis/_site.yml“,”analysis/gwas_pairs_2.Rmd"))
html bf034aa Jean Morrison 2019-10-17 Build site.
Rmd 96d3d07 Jean Morrison 2019-10-17 wflow_publish(“analysis/gwas_pairs_2.Rmd”)
html 4cf5222 Jean Morrison 2019-10-17 Build site.
Rmd c2e7daf Jean Morrison 2019-10-17 wflow_publish(“analysis/gwas_pairs_2.Rmd”)
html 5659dec Jean Morrison 2019-10-17 Build site.
Rmd 4a59a3f Jean Morrison 2019-10-17 wflow_publish(“analysis/gwas_pairs_2.Rmd”)
html a1c2e09 Jean Morrison 2019-10-15 Build site.
Rmd 12192aa Jean Morrison 2019-10-15 wflow_publish(c(“analysis/index.Rmd”, “analysis/gwas_pairs_2.Rmd”))

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